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MacVector inc pustell dna matrix method
Pustell Dna Matrix Method, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/pustell+dna+matrix/pustell+dna+matrix/pmc10360390-339-17-22
Average 90 stars, based on 1 article reviews
pustell dna matrix method - by Bioz Stars, 2026-09
90/100 stars

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Article Title: High Level of Structural Polymorphism Driven by Mobile Elements in the Hox Genomic Region of the Chaetognath Spadella cephaloptera
Article Snippet: Whenever similarity with a mobile element component was detected (transposase or polyprotein), another Blast search was conducted against R EPBASE , and terminal repeats were examined at the extremities using pustell DNA matrix (dot plot) implemented in MacVector (MacVector Inc.).

Article Title: Sequence variation within the rRNA gene loci of 12 Drosophila species
Article Snippet: Analysis of the repeat structure of the IGS of each species was done using Tandem Repeats Finder ( Benson 1999 ) and Pustell DNA Matrix (MacVector v 7.2.3, Accelrys).

Article Title: Analysis of the largest tandemly repeated DNA families in the human genome
Article Snippet: Self-similarity dot plots were performed using MacVector pustell DNA matrix.

Article Title: In and out of the rRNA genes: characterization of Pokey elements in the sequenced Daphnia genome
Article Snippet: Identification of repeat sequences within Pokey , and comparisons between Pokey and rDNA were performed using Pustell DNA matrix in MacVector 10.0 (MacVector Inc., Cary, NC, USA).

Generated:

Article Title: Human GPR42 is a transcribed multisite variant that exhibits copy number polymorphism and is functional when heterologously expressed.
Article Snippet: .. The plot was generated with a Pustell DNA Matrix (scoring matrix DNA identity, window size of 30, similarity 90%) in MacVector version 13.5. ..

Sequencing:

Article Title: Sequence and Organization of the Neodiprion lecontei Nucleopolyhedrovirus Genome
Article Snippet: An ORF was considered clearly identified if any of the following criteria were met. (i) A blastp search showed a baculovirus match with an E value of 0.1 or less. (ii) Amino acid identity to a baculovirus homologue was 20% or greater based on DNAStar Megalign ClustalW analysis of complete ORFs. (iii) A conserved domain was found. (iv) Matches were close but did not meet the first three criteria, but ORFs showed a significant match to clearly identified ORFs in NeseNPV as determined by A Garcia-Maruniak, et al. ( 24 ). .. The sequence was analyzed for repeats using MacVector's Pustell DNA matrix, Emboss Palindrome ( 23 ), and Tandem Repeats Finder ( 9 ). .. Multiple alignments were performed using DNAStar's Megalign ClustalW alignment, and percent amino acid identity indicates the percentage of identical residues between complete ORFs.

Article Title: Sequence and Organization of the Neodiprion lecontei Nucleopolyhedrovirus Genome
Article Snippet: An ORF was considered clearly identified if any of the following criteria were met. (i) A blastp search showed a baculovirus match with an E value of 0.1 or less. (ii) Amino acid identity to a baculovirus homologue was 20% or greater based on DNAStar Megalign ClustalW analysis of complete ORFs. (iii) A conserved domain was found. (iv) Matches were close but did not meet the first three criteria, but ORFs showed a significant match to clearly identified ORFs in NeseNPV as determined by A Garcia-Maruniak, et al. (24). .. The sequence was analyzed for repeats using MacVector’s Pustell DNA matrix, Emboss Palindrome (23), and Tandem Repeats Finder (9). .. Multiple alignments were performed using DNAStar’s Megalign ClustalW alignment, and percent amino acid identity indicates the percentage of identical residues between complete ORFs.



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